Help

Start with a task

• Make your first figureOne path from sign-up to a downloaded box plot.
• Compare two groups of samplesDifferential expression with DESeq2, edgeR, limma-voom or limma.
• Build a survival signatureCox screen, LASSO-Cox signature and evaluation.
• Analyse single-cell dataQC to trajectories on Scanpy or Seurat, and RNA velocity on Scanpy.
• Download TCGA expression filesCount, TPM and FPKM matrices with checksums.
• Use your own dataWhat you can upload, where, and how large.
• Export or delete your dataSelf-service, in Settings → Privacy.
• Cite the dataThe TCGA acknowledgement and the GDC paper.

Common questions

• What data does Blueprint hold?
• Do I need an account?
• Why did my analysis finish instantly?
• Which formats can I download?
• What do the paid plans change?

See every question

Still stuck?

See how to get in touch and what to include in a problem report. For scripts, the developer guides walk through common tasks, and the API reference lists the endpoints with their rate limits and status codes.